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1. github.com › husonlab › megan-cehusonlab/megan-ce: MEGAN Community Edition - GitHub

   github.com › husonlab › megan-ce

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   megan-ce. MEGAN Community Edition - Interactive exploration and analysis of large-scale microbiome sequencing data. Daniel H. Huson, Sina Beier, Isabell Flade, Anna Gorska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh and Rewati Tappu. PLoS Computational Biology, 2016.

   Name	Name
   antbuild	antbuild
   jars	jars
   src	src
   tools	tools

   See full list on github.com

2. www.ncbi.nlm.nih.gov › pmc › articlesMEGAN analysis of metagenomic data - PMC

   www.ncbi.nlm.nih.gov › pmc › articles

   Sep 19, 2006 · This paper introduces MEGAN, a new computer program that allows laptop analysis of large metagenomic data sets. In a preprocessing step, the set of DNA sequences is compared against databases of known sequences using BLAST or another comparison tool.

   • Author: Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster
   • DOI: 10.1101/gr.5969107

   • Publish Year: 2007
   • Publication: Genome Res. 2007 Mar; 17(3): 377-386.

3. link.springer.com › referenceworkentry › 10MEtaGenome ANalyzer (MEGAN): Metagenomic Expert Resource

   link.springer.com › referenceworkentry › 10

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   Jan 1, 2014 · MEGAN = MEtagenome ANalyzer. Definition. MEGAN is a tool for analyzing metagenomic sequencing data, allowing the user to interactively explore the taxonomic and functional content of a dataset. It also supports the comparison of multiple datasets.

   • Email: daniel.huson@uni-tuebingen.de

4. www.linkedin.com › pulse › metagenomics-megan-metaMetagenomics with MEGAN (MetaGenome ANalyzer) Tutorial!

   www.linkedin.com › pulse › metagenomics-megan-meta

   Apr 23, 2024 · MEGAN, short for MetaGenome ANalyzer, is a comprehensive bioinformatics tool designed to facilitate the exploration and interpretation of metagenomic datasets.

5. www.ncbi.nlm.nih.gov › pmc › articlesMEGAN Community Edition - Interactive Exploration and ...

   www.ncbi.nlm.nih.gov › pmc › articles

   Jun 21, 2016 · The compressed fastq files in a metagenome or metatranscriptome sequencing project are (1) compared against a protein reference database such as NCBI-nr using DIAMOND. (2) Taxonomic and functional analysis is then performed on the diamond files using Meganizer.

   • Author: Daniel H. Huson, Sina Beier, Isabell Flade, Anna Górska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joac...
   • DOI: 10.1371/journal.pcbi.1004957

   • Publish Year: 2016
   • Publication: PLoS Comput Biol. 2016 Jun; 12(6): e1004957.

6. mygoblet.org › sites › defaultMEGAN5 tutorial, September 2014, Daniel Huson - mygoblet.org

   mygoblet.org › sites › default

   Getting started and taxonomic analysis. Open a MEGAN file file: 1mix/mix-454-reads.rma. Collapse and expand tree. Explore node labeling and visualization. Inspect assigned reads. Chart assigned reads. Compute rarefaction curve. Explore microbial attributes. What are the ten species present in this synthetic in-vitro sample? 4.

7. People also ask

   What is a Megan file?

   • The input to MEGAN is a file of DNA reads and a file containing all their hits in a reference database, usually in BLAST or SAM format. In addition, at start-up, MEGAN reads in the whole NCBI taxonomy.

   MEtaGenome ANalyzer (MEGAN): Metagenomic Expert Resource

   link.springer.com/referenceworkentry/10.1007/978-1-4614-6418-1_4-1

   See all results for this question

   What is Megan Community Edition?

   • MEGAN Community Edition - Interactive exploration and analysis of large-scale microbiome sequencing data Daniel H. Huson, Sina Beier, Isabell Flade, Anna Gorska, Mohamed El-Hadidi, Suparna Mitra, Hans-Joachim Ruscheweyh and Rewati Tappu. PLoS Computational Biology, 2016

   husonlab/megan-ce: MEGAN Community Edition - GitHub

   github.com/husonlab/megan-ce

   See all results for this question

   What is Megan & how does it work?

   • While MEGAN is mainly designed for interactive use on a laptop or desktop computer, all features of the program can also be accessed in command-line mode, and thus analyses can also be performed on a server within the framework of a larger bioinformatic analysis pipeline.

   MEtaGenome ANalyzer (MEGAN): Metagenomic Expert Resource

   link.springer.com/referenceworkentry/10.1007/978-1-4614-6418-1_4-1

   See all results for this question

   What tools does Megan provide?

   • ( A) MEGAN provides a Find tool to search for specific taxa of interest. ( B) The result of a search is highlighted in a detailed summary of the analysis. ( C) MEGAN provides an Inspector tool to view the individual sequence comparisons upon which the assignment of a particular read to a particular taxon is based.

   MEGAN analysis of metagenomic data - PMC - National Center for

   www.ncbi.nlm.nih.gov/pmc/articles/PMC1800929/

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8. raw.githubusercontent.com › megan5_manualUser Manual for MEGAN V5.1 - GitHub

   raw.githubusercontent.com › megan5_manual

   User Manual for MEGAN V5.1.4. Daniel H. Huson. January 10, 2014. Contents. Introduction. Getting Started. Obtaining and Installing the Program. Licensing. Program Overview. Importing, Reading and Writing Files. The NCBI Taxonomy. The NCBI-NR and NCBI-NT Databases. Assigning Reads to Taxa. Identi cation of SEED Functional Classes.