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Genetic Programming system
- RGP is a simple yet flexible modular Genetic Programming system for the R environment. The system implements classical untyped tree-based genetic programming as well as more advanced variants including, for example, strongly typed genetic programming and Pareto genetic programming.
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RGP is a simple modular Genetic Programming (GP) system build in pure R. In addition to general GP tasks, the system supports Symbolic Regression by GP through the familiar R model formula interface.
May 30, 2017 · RGP is a simple yet flexible modular Genetic Programming system for the R environment. The system implements classical untyped tree-based genetic programming as well as more advanced variants including, for example, strongly typed genetic programming and Pareto genetic programming.
- Oliver Flasch 7. August 2014 (RGP release 0.4-1)
- 2 Application Areas
- 3 Features
- 3.1 Solution Representation
- 3.2 GP Operators
- 3.3 Analysis and Visualization
- 4 Tutorials
- 4.1 Installation
- 4.2 Getting Started
- > functionSet1 <- functionSet("+", "*", "-")
- > inputVariableSet1 <- inputVariableSet("x")
- 5 Outlook
RGP is genetic programming system based on, as well as fully in-tegrated into, the R environment. The system implements classical tree-based genetic programming as well as other variants including, for example, strongly typed genetic programming and Pareto genetic programming. It strives for high modularity through a consistent architecture that al...
GP in general, and RGP as a modular GP system in particular, has a wide array of possible application areas. Basically, GP is a evolutionary search heuristic for arbitrary symbolic expressions, i.e. mathematical or logical formulas.. A non-exhaustive list of RGP-applications include: Symbolic Regression: Given a set of measurement data divided into...
To give an idea of the extend and limits of RGP’s feature set, this section provides an non-exhaustive overview of the system. Detailed documentation of all functionality, including examples, can be found in the online help of the package.
RGP represents candidate solutions, i.e. GP individuals, as R expres-sions that can be directly evaluated by the R interpreter. This allows the whole spectrum of functions available in R to be used as building blocks for GP. Because R expressions are internally represented as trees, RGP may be seen as a tree-based GP system. However, the individual...
RGP provides default implementations for several initialization, vari-ation, and selection operators. The system offers clear interfaces for user-defined operators, as well as the possibility to replace the evo-lutionary algorithm used for GP search with user defined variants, without the need to rewrite other functionality. Initialization Individu...
The RGP system provides tools for the analysis and visualization of GP individuals and populations. GP individuals, i.e. symbolic regressions, can be visualized as trees (in multiple levels of detail), as formulas in mathematical notation, as points in a Pareto plot, or as plots of their input/output behaviour. GP populations can be visualized as f...
To help getting started with RGP, this section provides a set of hands-on tutorials, beginning with simple tasks, including getting RGP up and running in an existing R installation, up to advanced topics like strongly typed genetic programming. All tutorials are meant to be followed stepwise in a running R session.
RGP is available as an R package on the comprehensive R archive network CRAN, making installation extremely simple. To install RGP and all it’s dependencies, issue the following command in a running session: install.packages("rgp") prompt will appear asking to select a CRAN mirror will appear if it is the first time an R package is installed in you...
This tutorial provides an interactive walkthrough of solving a sim-ple symbolic modelling problem with GP. Only basic low-level RGP functionality is used, high-level convenience functions are intention-ally avoided to make each step in the modelling process clear and explicit. In this first example, we configure RGP to create polynomial ap-proximat...
We then create a set of input variables containing just the symbol x. Thereby we restrict the search space to univariate functions, i.e. function of one variable:.
Finally, we create a set of constants. Constants are not created di-rectly, but via constant factory functions. Each time a constant has to be created during GP search, RGP calls a constant factory func-tion. Here we use a single constant factory that returns constants from a normal distribution:
This concludes the short introduction to RGP. There are many more possibilities and use case scenarios not touched upon here. Also, RGP is a evolving system, so new functionality might be present to improve the performance or ease of use at tasks described in the tutorials. The Rsymbolic website6 provides the most current informa- tion on the curre...
Dec 4, 2016 · I am trying to do non-linear regression using R genetic package (rgp) using technique used here: Fitting a curve to specific data (see second method). I am using R package drc for heartrate data:
Sep 21, 2023 · Genetic programming (GP) is a machine learning technique inspired by natural evolution, that solves complex problems through a process of mutation, crossover, and selection. GP represents solutions as a population of computer programs and applies genetic operators to evolve them.
It is the radiographic examination of the renal pelvis and ureter by means of contrast medium injection via a retrogradely introduced ureteric catheter. The catheter is pushed into...
rgp — R genetic programming framework. Homepage: http://rsymbolic.org/projects/show/rgp - rgp/R/rgp.r at master · cran/rgp :exclamation: This is a read-only mirror of the CRAN R package repository.
