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1. • Depositing, storing, analysing and sharing proteomics data

     • PRIDE is a comprehensive resource for depositing, storing, analysing and sharing proteomics data which enables reprocessing and reanalysis of data from different laboratories across the globe.
     www.ncbi.nlm.nih.gov/pmc/articles/PMC10730798/

     The PRIDE database resources in 2023 - PMC

2. People also ask

   What is a PRIDE database?

   • The PRIDE database constitutes a structured data repository, and stores the original experimental data from the researchers without editorial control over the submitted data.

   Proteomics Identifications Database - Wikipedia

   en.wikipedia.org/wiki/Proteomics_Identifications_Database

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   What data types can be stored in PRIDE archive?

   • Therefore, each dataset in PRIDE Archive can contain heterogeneous data types such as peptide/protein identifications and quantification values, the mass spectra (peak lists and raw data), the searched sequence databases or spectral libraries, programming scripts and any other technical and/or biological metadata provided by the data submitters.

   PRIDE database and related tools and resources in 2019: improving

   academic.oup.com/nar/article/47/D1/D442/5160986

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   What is PRIDE XML?

   • PRIDE is a standards-compliant public repository, meaning that its own XML -based data exchange format for submissions, PRIDE XML, was built around the Proteomics Standards Initiative mzData standard for mass spectrometry.

   Proteomics Identifications Database - Wikipedia

   en.wikipedia.org/wiki/Proteomics_Identifications_Database

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   How many datasets have been submitted to PRIDE archive in 2021?

   • In this manuscript, we summarize the developments in PRIDE resources and related tools since the previous update manuscript was published in Nucleic Acids Research in 2019. The number of submitted datasets to PRIDE Archive (the archival component of PRIDE) has reached on average around 500 datasets per month during 2021.

   PRIDE database resources in 2022: a hub for mass spectrometry-based

   academic.oup.com/nar/article/50/D1/D543/6415112

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3. www.ebi.ac.uk › pridePRIDE - Proteomics Identification Database - EMBL-EBI

   www.ebi.ac.uk › pride

   • Cached

   PRIDE Submission Tool enables direct user submissions of protein and peptide identification or quantification data, along with the spectra to PRIDE Archive.

   • Help

     PRIDE Resources Documentation General Help Pages....

   • License

     PRIDE License Agreement. PRIDE is an open-source and...

   • About

     The PRIDE PRoteomics IDEntifications (PRIDE) Archive...

   • Contact

     PRIDE - PRoteomics IDEntifications Database. Juan Antonio...

   • PRIDE Spectral Libraries

     These spectrum libraries are derived from the PRIDE Cluster...

   • PRIDE Peptidome

     Discover original mass spec projects used by PRIDE Peptidome...

   • PRIDE Submission Tool

     PRIDE Submission Tool. The PRIDE Submission Tool (also know...

   • PRIDE Utilities Libraries

     The PRIDE Utilities module contains a series of data...

4. www.ebi.ac.uk › pride › markdownpagePRIDE - Proteomics Identification Database - EMBL-EBI

   www.ebi.ac.uk › pride › markdownpage

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   What constitutes a PRIDE dataset? The general rule is that a dataset should correspond to the data described in a single manuscript, if all data in the manuscript comes from the same data workflow (e.g. Data Dependent Acquisition, DDA).

5. www.ebi.ac.uk › training › onlineWhat is PRIDE? | PRIDE - EMBL-EBI

   www.ebi.ac.uk › training › online

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   The PRIDE (PRoteomics IDEntifications) database is a publicly-accessible repository (Figure 1) for mass spectrometry (MS)-based proteomics data, which covers: protein and peptide identifications (including post-translational modifications), protein and peptide expression values, technical and biological metadata and any other supporting ...

6. en.wikipedia.org › wiki › Proteomics_IdentificationsProteomics Identifications Database - Wikipedia

   en.wikipedia.org › wiki › Proteomics_Identifications

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   The PRIDE (PRoteomics IDEntifications database) is a public data repository of mass spectrometry-based proteomics data, and is maintained by the European Bioinformatics Institute as part of the Proteomics Team.

7. academic.oup.com › nar › articleThe PRIDE database resources in 2022: a hub for mass ...

   academic.oup.com › nar › article

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   Nov 1, 2021 · PRIDE is one of the founding members of the global ProteomeXchange (PX) consortium and an ELIXIR core data resource. In this manuscript, we summarize the developments in PRIDE resources and related tools since the previous update manuscript was published in Nucleic Acids Research in 2019.

8. academic.oup.com › nar › articlePRIDE database and related tools and resources in 2019 ...

   academic.oup.com › nar › article

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   Nov 5, 2018 · The PRoteomics IDEntifications (PRIDE) database (https://www.ebi.ac.uk/pride/) is the world’s largest data repository of mass spectrometry-based proteomics data, and is one of the founding members of the global ProteomeXchange (PX) consortium.

9. rdm.elixir-belgium.org › pridePRoteomics IDEntifications (PRIDE) | RDM Guide - ELIXIR Belgium

   rdm.elixir-belgium.org › pride

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   PRIDE established and is part of ProteomeXchange (PX) consortium of Mass Spectrometry (MS) proteomics resources, with the overall aim of standardizing data submission and dissemination of proteomics data worldwide.