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  1. regendbase.org › tools › mirandamiRanda - RegenDbase

    miRanda. Use miRanda software to detect potential miRNA target sites in your genomic sequences. Sequences. Mature miRNA Sequences. FASTA format. Target Sequences. FASTA format. Limit: 1,000. Use sample data.

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      History - miRanda - RegenDbase

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      RegenDbase is funded by an Institutional Development Award...

    • About Us

      We integrate functional genomic datasets with up-to-date...

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      RegenDbase is funded by an Institutional Development Award...

    • Regendbase Data

      Statistics (Release 2017-12-07) RegenDbase contains gene and...

  2. mirtoolsgallery.tech › mirtoolsgallery › nodemiRanda (microRNA.org) | miRToolsGallery

    Sep 2, 2016 · Detailed information about target genes, target processes, and open-source software for target prediction (miRanda) is available at http://www.microrna.org. Our analysis suggests that miRNA genes, which are about 1% of all human genes, regulate protein production for 10% or more of all human genes.

  3. Images

    • 微生信-miRanda在线预测miRNA-mRNA，miRNA-circRNA，miRNA-lncRNA结合
    • Scoring matrix used by the miRanda algorithm. | Download Scientific Diagram
    • The Venn diagram represents the sets of miRNA target genes for each ...

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  4. github.com › hobywan › mirandaGitHub - hobywan/miranda: A software to predict miRNA ...

    miranda is a nucleobase sequence analyzer written in Java. It computes a probable miRNA secondary structure from a given sequence, regarding the released conformation energy and the number of matched bases.

  5. bioinformaticsworkbook.org › dataAnalysis › SmallRNAPredict miRNA and mRNA interactions with miranda software

    Potential target sites are identified using a two-step strategy. First a dynamic programming local alignment is carried out between the query miRNA sequence and the reference sequence. This alignment procedure scores based on sequence complementarity and not on sequence identity. In other words we look for A:U and G:C matches instead of A:A, G ...

  6. www.ncbi.nlm.nih.gov › pmc › articlesTools for Sequence-Based miRNA Target Prediction: What to ...

    Dec 9, 2016 · Moreover, this miRanda algorithm was included in the miRNA web-based tool and optimized for use with human, mouse and rat data . The miRanda tool can be also downloaded with an open-source license and researchers can adjust the algorithm.

    • Ángela L Riffo-Campos, Ismael Riquelme, Priscilla Brebi-Mieville
    • 10.3390/ijms17121987
    • 2016
    • Int J Mol Sci. 2016 Dec; 17(12): 1987.

  7. www.nature.com › articles › s41598/021/03215-wBiological features between miRNAs and their targets are ...

    Dec 10, 2021 · Metrics. MicroRNAs (miRNAs) are ~ 22 nucleotide ubiquitous gene regulators. They modulate a broad range of essential cellular processes linked to human health and diseases. Consequently,...

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  9. tools4mirs.org › software › target_predictionTools4miRs - miRanda

    Oct 5, 2004 · miRanda algorithm is based on a comparisone of miRNAs complementarity to 3'UTR regions. The binding energy of the duplex structure, evolutionary conservation of the whole target site and its position within 3”UTR are calculated and account for a final result which is a weighted soum of match and mismatch scores for base pairs and gap penalties.