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Sep 2, 2016 · miRanda is a tool for predicting microRNA target genes and exploring their expression patterns in various tissues and cell lines. It uses a machine learning method to rank microRNA target sites and a graphical interface to visualize the regulatory networks.
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Our database aim to make it easy for researchers to find the...
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miRDB is an online database for miRNA target prediction and functional annotations. All the targets in miRDB were predicted by a bioinformatics tool, MirTarget, which was developed by analyzing thousands of miRNA-target interactions from high-throughput sequencing experiments.
miRanda is a software that predicts potential miRNA target sites in genomic sequences. You can upload your own sequences or use sample data, and adjust the parameters to optimize the search results.
miRBase is a comprehensive database of microRNA sequences and annotations, providing access to the latest miRNA data.
Potential target sites are identified using a two-step strategy. First a dynamic programming local alignment is carried out between the query miRNA sequence and the reference sequence. This alignment procedure scores based on sequence complementarity and not on sequence identity. In other words we look for A:U and G:C matches instead of A:A, G ...
Oct 5, 2004 · miRanda is a tool that compares miRNA complementarity to 3'UTR regions and calculates binding energy, conservation and gap penalties. It can be used online or locally and supports various organisms and genome versions.
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Dec 9, 2016 · miRNAs represent a novel epigenetic mechanism that regulates gene expression in many homoeostatic processes and pathological conditions within the cells. The dysfunction of miRNAs has been associated with a large number of diseases.
