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Dec 11, 2023 · Thanks to heavy use of bitwise operators, sequential memory access patterns, multithreading, and higher-level algorithmic improvements, PLINK 1.9 is much, much faster than PLINK 1.07 and other popular software.
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PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
plink. or. ./plink. at the command line prompt will run PLINK, no matter which current directory you happen to be in. PLINK is a command line program -- clicking on an icon with the mouse will get you nowhere. Below, on this page, is a general overview of how to use the command line to run PLINK.
PLINK is a free, commonly used, open-source whole-genome association analysis toolset designed by Shaun Purcell. The software is designed flexibly to perform a wide range of basic, large-scale genetic analyses.
6 days ago · PLINK 2.0. Quick index search. PLINK 2.00 alpha. PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, LLC and Human Longevity, Inc., and substantial input from Stanford's Department of Biomedical Data Science.
When invoked with no parameters, --help provides a summary of all PLINK flags, starting with the main functions. This is long (over 1000 lines); we recommend you pipe the output through a terminal pager like Unix less or more, or dump it to a file with e.g. plink --help > plink-help.txt
First, let's start with the PLINK options. I will list them, simultaneously providing a link to them on the PLINK website. I will also tell you how can you (easily?) find answers for any PLINK option. Second, I will talk about the resulting ped and map files, including their structure.
The plink portal provides learners with a simple and intuitive user interface. It is directly linked with the Department for Education classic plink, which is a powerful and highly adaptable LMS.
PLINK provides a simple interface for recoding, reordering, merging, flipping DNA-strand and extracting subsets of data. Recode and reorder a sample. A basic, but often useful feature, is to output a dataset: with the PED file markers reordered for physical position,
