Search results
EMBL-EBI homepage | EMBL-EBI
PDBsum is a comprehensive database of 3D structures in the Protein Data Bank, allowing users to browse, search and visualize protein molecules, interactions and functions.
PDBsum1 is a software tool that allows you to run PDBsum Generate locally and access the computed data. PDBsum Generate is a web service that provides comprehensive analysis of protein data bank (PDB) entries.
PDBsum1 is a standalone set of programs to perform the same structural analyses as provided by the PDBsum web server (https://www.ebi.ac.uk/pdbsum). The server has pages for every entry in the Protein Data Bank (PDB) and can also process user‐uploaded PDB files, returning a password‐protected set of pages that are retained for around 3 months.
- Roman A. Laskowski
- Protein Sci. 2022 Dec; 31(12): e4473.
- 10.1002/pro.4473
- 2022/12
Oct 27, 2017 · Users can upload their own structures for analysis via the Generate link on the PDBsum home page. A unique PDB code and password are e‐mailed when the analyses are complete, giving access to a set of PDBsum pages with all the features described above.
- Roman A. Laskowski, Jagoda Jabłońska, Lukáš Pravda, Radka Svobodová Vařeková, Janet M. Thornton
- 10.1002/pro.3289
- 2018
- Protein Sci. 2018 Jan; 27(1): 129-134.
Sep 5, 2017 · PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others.
Oct 17, 2022 · As well as the above, PDBsum can also analyse user-uploaded structures and return a password-protected set of analyses for each. This feature is accessed via the ‘PDBsum Generate’ link on the home page ( https://www.ebi.ac.uk/pdbsum ). Once the calculations are complete, a link to the results, with password, is e-mailed to the user.
