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VADAR (Volume, Area, Dihedral Angle Reporter) is a compilation of more than 15 different algorithms and programs for analyzing and assessing peptide and protein structures from their PDB coordinate data.
type ``vadar'', then follow directions on screen (a menu will be displayed). All of the options of Vadar may be modified by selecting the ``Modify Parameter File'' function from the Vadar menu. One of VADAR's options is to produce output suitable for the molscript program. The molscript program is NOT part of the VADAR package.
Jun 9, 2005 · VADAR produces extensive tables and high quality graphs for quantitatively and qualitatively assessing protein structures determined by X-ray crystallography, NMR spectroscopy, 3D-threading or homology modeling.
Volume, Area, Dihedral Angle Reporter (VADAR) is a freely available protein structure validation web server that was developed as a collaboration between Dr. Brian Sykes and Dr. David Wishart at the University of Alberta. [1]
Jul 1, 2003 · VADAR uses pre-calculated tables of extended-residue areas derived from each of the four program options to ensure the fractional areas are consistent with the user-chosen option. VADAR reports ASA values both for the whole residue and for side chains.
VADAR (Volume Area Dihedral Angle Reporter) performs structural analysis of protein coordinate data . It provides the user with objective information on secondary structure, residue volume, accessible surface area as well as phi and psi angles, and hbonds.
Jul 1, 2003 · A large number of these algorithms have been re-written and optimized to improve their results and facilitate rapid on-line calculation. VADAR should be particularly useful for evaluating newly determined X-ray, NMR or homology modeled protein structures. The VADAR web server is freely accessible at http://redpoll.pharmacy.ualberta.ca/vadar.
Aug 1, 2003 · VADAR (Volume Area Dihedral Angle Reporter) is a comprehensive web server for quantitative protein structure evaluation.
VADAR (Volume Area Dihedral Angle Reporter) is a comprehensive web server for quantitative protein structure evaluation. It accepts Protein Data Bank (PDB) formatted files or PDB accession numbers as input and calculates, identifies, graphs, reports and/ or evaluates a large number (>30) of key structural parameters both for individual residues ...
Jul 1, 2003 · VADAR (Volume Area Dihedral Angle Reporter) is a comprehensive web server for quantitative protein structure evaluation. It accepts Protein Data Bank (PDB) formatted files or PDB accession numbers as input and calculates, identifies, graphs, reports and/or evaluates a large number (>30) of key structural parameters both for individual ...
