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  1. saves.mbi.ucla.eduSAVESv6.1 - Structure Validation Server

    UCLA-DOE LAB — SAVES v6.1. To run any or all programs: upload your structure, in PDB format only. The server is slower, please be patient. Send any questions or compaints to holton at mbi.ucla.edu. References. ERRAT. Reference: Verification of protein structures: patterns of nonbonded atomic interactions, Colovos C and Yeates TO, 1993.

  2. www.doe-mbi.ucla.edu › SAVESSAVES – UCLA-DOE Institute

    Jul 15, 2021 · Structure Analysis and Validation. SAVES has been in operation since 2004 and is currently operating version 6. It is an interactive validation server for 5 programs commonly used in protein structure validation.

  3. saves.mbi.ucla.edu › usageSAVESv6.1 - Structure Validation Server - University of...

    4 days ago · total jobs since v6.1 (Jul 17, 2023): 71,259; average jobs per day: 766.23 ± 221.49 in past 93 days; total jobs since v6.0 (Nov 23, 2020): 1,127,782; average jobs per day: 848.6 over the past 1,329 days

  4. www.sciencedirect.com › science › articleProtein structure prediction - ScienceDirect

    Jan 1, 2022 · The SAVES v6.0 (https://saves.mbi.ucla.edu/) is a comprehensive toolkit and has five tools (ERRAT, VERIFY3D, PROVE, PROCHECK, and WHAT CHECK), which predict different types of stereochemical parameters of the protein structure. The Ramachandran plot predicts the structural stereochemical property.

  5. saves.mbi.ucla.eduSAVESv6.1 - Structure Validation Server - University of...

    saves @2024 - DOE-MBI Services • Usage Contact: holton at mbi.ucla.edu for any questions

  6. www.researchgate.net › figure › Protein-Structure-Validation-using-SAVES-V60_tbl1Protein Structure Validation using SAVES V6.0 - ResearchGate

    Download scientific diagram | Protein Structure Validation using SAVES V6.0 from publication: IN SILICO ANALYSIS OF ASPERGILLUS FLAVUS FUNGAL PROTEINS: STRUCTURAL AND FUNCTIONAL INSIGHTS...

  7. www.researchgate.net › figure › Peptide-structures-validation-through-SAVES-v60Peptide structures validation through SAVES v6.0 result and...

    Here, we suggest a novel antimicrobial peptide therapy-based method for treating MPXV infection. An in silico method was used to analyze the human antimicrobial peptides Histatin 1, 3, and its ...

  8. www.researchgate.net › post › What_tool_can_I_use_for_Ramachandran_plot_analysesWhat tool can I use for Ramachandran plot analyses?

    You can use UCLA-DOE LAB — SAVES v6.0 (https://saves.mbi.ucla.edu/). It is a server that makes an evaluation of the 3D structure of proteins using 5 different servers: WHATCHEK,...

  9. www.biostars.org › p › 9469348Protein structure validation

    May 9, 2021 · Using I-TASSER, 3D structure of a protein was predicted. The validation of the structure was checked in PROCHECK and only 61% residues were found in most favoured region, 4% were in disallowed region. Is the predicted model still acceptable? Noted that, In SAVES v6.0 - ERRAT quality factor was 80,

  10. www.nature.com › articles › s41598/023/47179-5Structure prediction, docking studies and molecular cloning of...

    Nov 15, 2023 · The best validation structure of MetPr protein was authenticated through the SAVES v6.0 (structure analysis and verification server version 6) online tool (http://SAVESv6.0—Structure...