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RCSB PDB Batch Download Service. 225,399 Structures from the PDB. 1,068,577 Computed Structure Models (CSM) Download Multiple Files from the PDB Archive. For downloading large amounts of data files, users are encouraged to use this shell script for batch download.
RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive. Computed Structure Models (CSM) from AlphaFold DB and ModelArchive.
- PDB Entry Files
- Small Molecule Files
- Experimental Data Files and 3DEM Maps
- Sequence Data
- Sequence Clusters Data
- Chemical Component Dictionary (CCD) Data
PDB entry files are available in several file formats (PDB, PDBx/mmCIF, XML, BinaryCIF), compressed or uncompressed, and with an option to download a file containing only "header" information (summary data, no coordinates).
Small molecule files, including the ligands/chemical components maintained in the Chemical Component Dictionary and the Biologically Interesting Molecule Reference Dictionary (BIRD) are available in multiple formats.
This table includes structure factors, NMR constraints, chemical shifts, electron density maps and map coefficient files.
Sequence data in FASTA format (full deposited sequence as in SEQRES records). Please note that the FASTA download service at URL /pdb/download/downloadFastaFiles.do?structureIdList=4hhb&compressionType=uncompressedhas been discontinued. Users will need to migrate to the new endpoints below. Note that the output of the new endpoints are per entity (...
Results of the weekly clustering of protein sequences in the PDB byMMseqs2at 30%, 40%, 50%, 70%, 90%, 95%, and 100% sequence identity. Note that these files use polymer entity identifiers, instead of chain identifiers to avoid redundancy. The files are plain text with one cluster per line, sorted from largest cluster to smallest.
A subset of properties is provided for all components from the Chemical Component Dictionary (CCD) which describes chemical properties of all molecules in the PDB archive. The atom file (cca.bcif) provides the following CIF columns: atom_id, comp_id, charge, and pdbx_stereo_config. The bond file (ccb.bcif) provides the following CIF columns: atom_i...
Use this page to download coordinate files and experimental data files, FASTA sequence files, and ligand data files for one or many PDB entries or small molecules. Enter PDB or small molecule IDs and click 'Download' to save a compressed folder containing your files onto your local disk.
Sep 11, 2024 · The 'get_pdb_file' function is a versatile tool designed to download Protein Data Bank (PDB) files from the RCSB database. It supports various file formats such as 'pdb', 'cif', 'xml', and 'structfact', with options for file compression and handling alternate locations (ALT) and insertion codes (INSERT) in PDB files.
Download PDB files and data from the wwPDB repository sites using ftp, https or rsync protocols. Find the latest and obsolete entries, sequence and InChI data, and archive holdings information.
Microsoft.PdbDownloader. Extremely easy-to-use, drag and drop, .PDB file downloader for any Microsoft owned executable/libraries on Windows. Download. You can download the latest builds on the releases section of this repository. Requirements. Windows, x64. Usage. Simply drag and drop the executable (.sys, .dll, .exe) on the application.
