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1. vina.scripps.eduAutoDock Vina

   vina.scripps.edu

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   AutoDock Vina is a fast and accurate tool for docking ligands to receptors. It uses the same PDBQT file format as AutoDock and can run on multiple CPUs or cores.

   • Downloads

     NOTE: The latest stable version of AutoDock Vina can be...

   • Tutorial

     Vina Video Tutorial This tutorial demonstrates molecular...

   • Manual

     “AutoDock” refers to AutoDock 4, and “Vina” to AutoDock Vina...

   • AutoDock

     AutoDock Vina does not require choosing atom types and...

   • License

     1. Definitions. "License" shall mean the terms and...

   • Questions

     Questions, problems or suggestions? FAQ! If you have a...

   • Documentation

     Search for: Documentation mgl-admin...

   • Changes

     flexible side chain conformations can not be found within...

2. Videos

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     15:18

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     AutoDock Vina Tutorial: Molecular Docking for Beginners

     14 Jul 2023

     20.7K views

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     18:18

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     Molecular Docking Tutorial: AUTODOCK VINA - PART 1 | Beginners to Advanced

     20 Mar 2020

     268.4K views

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     19:28

     youtube.com

     Autodock Vina Tutorial - Molecular Docking

     17 Dec 2020

     67.1K views

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3. vina.scripps.edu › downloadsDownloads – AutoDock Vina

   vina.scripps.edu › downloads

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   NOTE: The latest stable version of AutoDock Vina can be downloaded from the GitHub repository. Older versions are available here.

4. autodock-vina.readthedocs.io › en › latestAutoDock Vina: Molecular docking program — Autodock Vina 1.2. ...

   autodock-vina.readthedocs.io › en › latest

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   Learn how to use AutoDock Vina, a fast and widely used open-source docking engine, to predict protein-ligand binding modes. Find out how to install, run, and interpret Vina results, and how to contribute to its development.

5. autodock.scripps.eduAutoDock

   autodock.scripps.edu

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   AutoDock predicts how small molecules bind to a receptor of known 3D structure. It consists of two generations of software: AutoDock 4 and AutoDock Vina, with different features and functionalities.

6. vina.scripps.edu › manualManual – AutoDock Vina

   vina.scripps.edu › manual

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   Learn how to use AutoDock Vina, a fast and accurate molecular docking program, with this comprehensive manual. Find out about its features, license, tutorial, frequently asked questions, and how to get help and report bugs.

7. github.com › ccsb-scripps › AutoDock-Vinaccsb-scripps/AutoDock-Vina: AutoDock Vina - GitHub

   github.com › ccsb-scripps › AutoDock-Vina

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   AutoDock Vina is an open-source docking engine for drug discovery and virtual screening. It has a simple scoring function, rapid gradient-optimization, and Python bindings. See installation, documentation, and citations on GitHub.

8. People also ask

   Where can I find the latest version of AutoDock Vina?

   • NOTE: The latest stable version of AutoDock Vina can be downloaded from the GitHub repository. Older versions are available here. See also: GUIs, web interfaces, etc. | History of changes Questions, problems or suggestions? See this site.

   Downloads - AutoDock Vina

   vina.scripps.edu/downloads/

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   How does AutoDock Vina work?

   • Since the individual runs are executed in parallel, where appropriate, exhaustiveness also limits the parallelism. Unlike in AutoDock 4, in AutoDock Vina, each run can produce several results: promising intermediate results are remembered. These are merged, refined, clustered and sorted automatically to produce the final result.

   Manual – AutoDock Vina

   vina.scripps.edu/manual/

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   What specialized docking methods are available in Vina?

   • However, some of the specialized docking methods are now available in Vina (v1.2.x) such as macrocyclic flexibility, specialized metal coordination models, explicit waters hydrated and simultaneous docking of multiple ligands. Vina was further extended by adding Python bindings to facilitate programmatic access to the docking engine functions.

   About AutoDock Vina — Autodock Vina 1.2.0 documentation - Read t…

   autodock-vina.readthedocs.io/en/latest/introduction.html

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   What is the difference between AutoDock & Vina?

   • Binding mode prediction accuracy on the test set. “AutoDock” refers to AutoDock 4, and “Vina” to AutoDock Vina 1. Ease of Use Vina’s design philosophy is not to require the user to understand its implementation details, tweak obscure search parameters, cluster results or know advanced algebra (quaternions).

   Manual – AutoDock Vina

   vina.scripps.edu/manual/

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   What is AutoDock Vina pdbqt?

   • AutoDock Tools is a module within the MGL Tools software package specifically for generating input (PDBQT files) for AutoDock or Vina. It can also be used for viewing the results. Can I dock two proteins with AutoDock Vina? You might be able to do that, but AutoDock Vina is designed only for receptor-ligand docking.

   Manual – AutoDock Vina

   vina.scripps.edu/manual/

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   How do I install AutoDock Vina?

   • AutoDock Vina can be easily installed with all its dependencies using pip or conda package managers. All source code is available under the Apache License, version 2.0 from github.com/ccsb-scripps/AutoDock-Vina and the Python Package index pypi.org/project/Vina. Please report bugs or enhancement requests through the Issue Tracker.

   AutoDock Vina: Molecular docking program — Autodock Vina 1.2.0

   autodock-vina.readthedocs.io/en/latest/index.html

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9. autodock-vina.readthedocs.io › en › latestAbout AutoDock Vina — Autodock Vina 1.2.0 documentation

   autodock-vina.readthedocs.io › en › latest

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   AutoDock Vina (Vina) is one of the docking engines in the AutoDock Suite, known for its speed, simplicity and open source. Learn about its features, modifications and extensions in this documentation.