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PDBsum is a pictorial database that provides an at-a-glance overview of the contents of each 3D structure deposited in the Protein Data Bank . It shows the molecule(s) that make up the structure (ie protein chains, DNA, ligands and metal ions) and schematic diagrams of the interactions between them.
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PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.
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EMBL's European Bioinformatics Institute: Big data for the life sciences
PDBsum entry na. Go to PDB code: NONE PDB id
M-CSA is a database of enzyme reaction mechanisms. It provides annotation on the protein, catalytic residues, cofactors, and the reaction mechanisms of hundreds of enzymes. There are two kinds of entries in M-CSA.
Sep 14, 2023 · You can upload your structure to PDBsum to have a full set of PDBsum analyses, including PROCHECK plots, generated for it. (Use the Generate option in the left-hand menu).
PDBsum1 tries to correct certain types of errors (eg missing chain identifiers, duplicate atom names, incorrect base names), but may not catch them all. If the programs fail to run correctly, you may need to check the file format.
