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AutoDock Vina is an open-source program for doing molecular docking. It was originally designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab (now CCSB) at The Scripps Research Institute. The latest version is available here. AutoDock Vina is one of the docking engines of the AutoDock Suite.
Download NOTE: The latest stable version of AutoDock Vina can be downloaded from the GitHub repository. Older versions are available here. OS Files Installation instructions autodock_vina_1_1_2_linux_x86.tgz See instructions Linux
What is the difference between AutoDock Vina and AutoDock 4? AutoDock 4 (and previous versions) and AutoDock Vina were both developed in the Molecular Graphics Lab at The Scripps Research Institute. AutoDock Vina inherits some of the ideas and approaches of AutoDock 4, such as treating docking as a stochastic global opimization of the scoring ...
Vina Video Tutorial This tutorial demonstrates molecular docking of imatinib using Vina with AutoDock Tools and PyMOL. Note that the version of Vina used in the tutorial is now old, so some differences are unavoidable. Specifically, the program option "all" is now called "out", and the predicted binding affinity is different in the current version of the software.
Apr 10, 2020 · Perl script (vina_vs_win.pl). Running Vina for virtual screening. On Ubuntu: Open the terminal (Ctrl+Alt+T) and type the following command: $ perl vina_vs_linux.pl. It will prompt for the name of a file containing all the names of ligands. Enter the name of the file and continue. or.
Dec 14, 2016 · AutoDock Vina is a bioinformatics tool that is used to perform in-silico docking of proteins with a ligand. It provides many options depending on the needs of a user. This tool offers blind docking and binding in a specific pocket as well, which is sometimes more demanding when the binding site is already known.
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Apr 19, 2020 · Bioinformatics Review. Share. 1 Min Read. SHARE. We have compiled all articles on docking into a Special Issue. This is a complete guide on molecular docking using Autodock Vina for beginners. It includes blind docking, site-specific docking, installation, output analysis, and so on. This issue includes the following articles:
Jul 29, 2017 · $ tar xvzf autodock_vina_1_1_2_linux_x86.tgz. After extracting the tar file of AutoDock Vina, you will see a folder in your Downloads directory named “autodock_vina_1_1_2_linux_x86”, which consists of a bin folder where you could see two setup files for vina: “vina” & “vina_split”. This ends the installation section of our tutorial.
Search for: Documentation mgl-admin 2019-03-16T15:02:02+00:00. Documentation Title
