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RCSB Protein Data Bank (RCSB PDB) enables breakthroughs in science and education by providing access and tools for exploration, visualization, and analysis of: Experimentally-determined 3D structures from the Protein Data Bank (PDB) archive. Computed Structure Models (CSM) from AlphaFold DB and ModelArchive.
Download Multiple Files from the PDB Archive. For downloading large amounts of data files, users are encouraged to use this shell script for batch download. Individual data files, including 3DEM maps and NMR NEF files, can also be downloaded from Structure Summary pages.
PDB entry files are available in several file formats (PDB, PDBx/mmCIF, XML, BinaryCIF), compressed or uncompressed, and with an option to download a file containing only "header" information (summary data, no coordinates).
Use this page to download coordinate files and experimental data files, FASTA sequence files, and ligand data files for one or many PDB entries or small molecules. Enter PDB or small molecule IDs and click 'Download' to save a compressed folder containing your files onto your local disk.
Research Collaboratory for Structural Bioinformatics Protein Data Bank. Simple and advanced searching for macromolecules and ligands, flexible APIs for programmatic users, specialized 1D-3D visualization tools, Molecule of the Month and other training resources at PDB-101, and more. Protein Data Bank Japan.
Jan 12, 2021 · Using this data download service, it is easy to download coordinates, experimental data, validation information, sequences and residue-level SIFTS mappings for a list of PDB identifiers. The service also supports data related to small molecules, such as wwPDB Chemical Component Dictionary and coordinates in PDB and SDF format for a list of ...
Please note that the FTP file download protocol in the PDB archive will be deprecated on November 1st 2024 (announcement). The PDB archive and versioned archive are updated every Wednesday at 00:00 UTC. wwPDB: https://files.wwpdb.org, rsync://rsync.wwpdb.org.
Did you ever wish you could get just a list of PDB IDs from your search? You can! From the results page of any search that returns multiple entries, the ‘Reports’ menu offers an option to ‘List Selected IDs’ to get a list of the PDB IDs from your results set. The list will appear in a new tab in your browser.
Oct 23, 2015 · The RCSB Protein Data Bank (PDB) provides public access to experimentally determined 3D-structures of biological macromolecules (proteins, peptides and nucleic acids).
Oct 19, 2024 · The 'get_pdb_file' function is a versatile tool designed to download Protein Data Bank (PDB) files from the RCSB database. It supports various file formats such as 'pdb', 'cif', 'xml', and 'structfact', with options for file compression and handling alternate locations (ALT) and insertion codes (INSERT) in PDB files.
