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  1. www.brassicadb.cnBrassicaceae Database

    It is now a new database which includes not only newly released genome sequences of Brassiceae species, but also published genomic data of most other Brassicaceae species. In total, we provided services for 41 genomes or genome versions from 26 species (refer to Species info ).

    • VEG MARKER

      BRAD CuGenDB Sol Genomics Network Radish Genome Database...

  2. brassicagenome.net › databasesdatabases - Brassica Genome

    • Brassica napus Panache Graph Pangenome Viewer
    • Brassica napus GBrowse Viewers and Search
    • Brassica oleracea GBrowse Viewers and Search
    • Brassica Rapa GBrowse Viewers and Search
    • Brassica Oleracea/Rapa/Napus Pangenome JBrowse Viewers and Search
    • Batch Download
    • Analysis Tools
    • Please Cite

    B. napus Panache graph pangenome viewer: Graph pangenome representing 10 diverse B. napuswhole genmome assemblies.

    See full list on brassicagenome.net

    B. napus pangenome GBrowse: including snps and functional annotation of genes.
    B. napus pangenome GBrowse Fast Keyword Search: Fast search on functional annotation of genes.
    B. napus cultivar Tapidor genome browser: including snps and functional annotation of genes.
    B. napus cultivar Darmor genome browser: including snps and functional annotation of genes.

    See full list on brassicagenome.net

    B. oleracea pan genome GBrowse: including snps and functional annotation of genes.
    B. oleracea pan genome GBrowse Fast Keyword Search: Fast search on functional annotation of genes.

    See full list on brassicagenome.net

    B. rapa genome browser: including comprehensive annotation of the repeat fraction of the genome using the genome viewer GBrowse2.

    See full list on brassicagenome.net

    JBrowse genome browserincluding presence/absence variation across the three species.
    KnetMiner instanceallowing to compare predicted genes with the Arabidopsis thaliana KnetMiner instance.

    See full list on brassicagenome.net

    B. oleracea/rapa/napus pangenome:
    B. napus pangenome:
    B. oleracea pangenome:

    See full list on brassicagenome.net

    BlastGbrowse: A sequence similarity search portal for blasting a query sequence to the Brassicagenomes and conveniently viewing hits in the corresponding Genome Browsers. Illumina paired read sequence data for several Brassica species, wild relatives and pathogens is available at TAGdb. All raw and assembled sequence data is freely available on req...

    See full list on brassicagenome.net

    Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Hurgobin, B., Golicz, A.A., Bayer, P.E., Chan, C.K.K., Tirnaz, S., Dolatabadian, A., Sc...
    The pangenome of an agronomically important crop plant Brassica oleracea. Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CKK, Severn-Ellis A, McCombie WR, Parkin IAP et al. Natu...
    The Brassica rapa Genome Sequencing Project Consortium. (2011) The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics 43: 1035-1040
    Marshall DJ, Hayward A, Eales D, Imelfort M, Stiller J, Berkman PJ, Clark T, McKenzie M, Lai K, Duran C, Batley J and Edwards D. (2010) Targeted identification of genomic regions using TAGdb. Plant...

    See full list on brassicagenome.net

  3. www.ncbi.nlm.nih.gov › pmc › articlesBRAD V3.0: an upgraded Brassicaceae database - PMC

    Jan 1, 2022 · The Brassicaceae Database (BRAD version 3.0, BRAD V3.0; http://brassicadb.cn) has evolved from the former Brassica Database (BRAD V2.0), and represents an important community portal hosting genome information for multiple Brassica and related Brassicaceae plant species.

    • 10.1093/nar/gkab1057
    • 2022/01/01

  4. ngdc.cncb.ac.cn › databasecommons › databaseBRAD - Database Commons - National Genomics Data Center

    The Brassicaceae Database (BRAD version 3.0, BRAD V3.0; http://brassicadb.cn) has evolved from the former Brassica Database (BRAD V2.0), and represents an important community portal hosting genome information for multiple Brassica and related Brassicaceae plant species.

    • Brassica database
    • 2011
    • 2021

  5. bmcplantbiol.biomedcentral.com › articles › 10BRAD, the genetics and genomics database for Brassica plants

    Oct 13, 2011 · BRAD, the Brassica database, is a web-based resource focusing on genome scale genetic and genomic data for important Brassica crops. BRAD was built based on the first whole genome sequence and on further data analysis of the Brassica A genome species, Brassica rapa (Chiifu-401-42).

    • Feng Cheng, Shengyi Liu, Jian Wu, Lu Fang, Silong Sun, Bo Liu, Pingxia Li, Wei Hua, Xiaowu Wang
    • 2011

  6. academic.oup.com › database › articleBrassica database (BRAD) version 2.0: integrating and mining ...

    Nov 20, 2015 · The Brassica database (BRAD) was built initially to assist users apply Brassica rapa and Arabidopsis thaliana genomic data efficiently to their research. However, many Brassicaceae genomes have been sequenced and released after its construction.

  7. www.ncbi.nlm.nih.gov › pmc › articlesThe Brassicaceae genome resource (TBGR): A comprehensive ...

    Jun 7, 2022 · A web-based comparative and functional genomic database, The Brassicaceae Genome Resource, compiles information from 82 genomes across 27 Brassicaceae species to facilitate Brassicaceae research. Go to: Introduction.