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ProtParam [Documentation / Reference] is a tool which allows the computation of various physical and chemical parameters for a given protein stored in UniProtKB or for a user entered protein sequence.
Welcome to the Protein Parameters web app for analysing protein sequences. The program performs most of the same functions as the Expasy ProtParam tool, but also allows you to enter a DNA sequence for translation.
Compute various physical and chemical parameters for a given protein sequence. The computed parameters include the molecular weight, theoretical pI (isoelectric point), amino acid composition, atomic composition, extinction coefficient, estimated half-life, instability index, aliphatic index and grand average of hydropathicity (GRAVY).
ProtParam computes various physico-chemical properties that can be deduced from a protein sequence. No additional information is required about the protein under consideration. The protein can either be specified as a UniProtKB accession number (AC) or ID, or in form of a raw sequence in which case space and numbers are ignored.
ProtParam - Reference. Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., Bairoch A.; Protein Identification and Analysis Tools on the Expasy Server;
Jun 14, 2024 · Protein Parameter Analysis with ProtParam. This repository contains a Python script for analyzing protein parameters using Biopython's ProtParam module. The script calculates various physicochemical properties of proteins from a FASTA file and writes the results to an output text file.
Database of genome-wide annotations of regulatory sites. Operated by the SIB Swiss Institute of Bioinformatics, Expasy, the Swiss Bioinformatics Resource Portal, provides access to scientific databases and software tools in different areas of life sciences.
Analyzing protein sequences with the ProtParam module. Protein sequences can be analysed by several tools, based on the ProtParam tools on the Expasy Proteomics Server. The module is part of the SeqUtils package.
UniProt is the world’s leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information. Cite UniProt. Proteins. UniProt Knowledgebase. Reviewed. (Swiss-Prot) 571,609. Unreviewed. (TrEMBL) 244,910,918. Species. Proteomes. Protein sets for species with sequenced genomes from across the tree of life.
Jul 1, 2003 · ProtParam calculates physico-chemical parameters of a protein sequence such as the amino acid composition, the pl, the atomic composition, the extinction coefficient, etc. ProtScale computes and represents the profile produced by any amino acid scale on a selected protein.
