Search results
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape is available as a platform-independent open-source Java application, released under the terms of the LGPL. By downloading Cytoscape, you agree that you have read the license agreement that follows and agree to its terms. If you don't agree, do not download Cytoscape.
Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and ...
Cytoscape can visualize and analyze network graphs of any kind involving nodes and edges (e.g., social networks). A vital aspect of the software architecture of Cytoscape is the use of plugins for specialized features.
Cytoscape 3.0 is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls. Cytoscape 3.0 represents a major redesign from the ground up, toward the goal of provide a stable, extensible, high-performance platform for network visualization and analysis.
Cytoscape 3.10.2 User Manual. The Cytoscape User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.
Presentations. Presentations compiled for recent or upcoming presentations. Feel free to copy, adapt and reuse! EBI 2021 Single Cell Workshop. Network Analysis. Advanced Visualization. Cytoscape Single Cell Analysis. Cytoscape Futures. Introduction to Cytoscape and Network Biology.
gui-distribution - Actual distribution created from core projects and core apps. app-developer - API JAR file for app developers. Instead of cloning each sub-project's repository one-by-one, you can use the utility script in the Cytoscape repository to initialize your workspace all at once (see below).
Quick Tour of Cytoscape¶ This chapter describes the basic layout and mechanics of using Cytoscape. If you would prefer to learn by doing, consider starting with the Basic Expression Analysis Tutorial. 4.1. Starter Panel¶ When you start Cytoscape, you can access basic functions from the Starter Panel:
Cytoscape/Network Analysis experience? None -- that's what I'm here for... Some network analysis, but what's Cytoscape? I've played with Cytoscape, but only for figures; I do a lot with networks, but mostly in R/Python/Matlab/... I do a lot with networks, and use Cytoscape occasionally; I do a lot with networks, and use Cytoscape a lot
