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1. www.ebi.ac.uk › thornton-srv › softwarePDBsum - EMBL-EBI

   www.ebi.ac.uk › thornton-srv › software

   PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.

   • Installation

     The parameters you need to define are: OPERATING_SYSTEM -...

   • Manual

     The results of the PDBsum1 run are listed in the index.html...

   • Contact Us

     An important part of EMBL-EBI’s mission is to disseminate...

   • PDBsum Generate

     EMBL-EBI homepage | EMBL-EBI

   • Resources and Software

     PDBsum is a pictorial database providing an at-a-glance...

   • PDBSum

     PDBsum: a comprehensive database of 3D structures in the...

   • Generate

     Explore the structure and function of any protein complex or...

   • Data resources and tools

     A public repository for electron microscopy (EM) density...

2. www.ebi.ac.uk › thornton-srv › databasesEMBL-EBI homepage | EMBL-EBI

   www.ebi.ac.uk › thornton-srv › databases

   PDBsum: a comprehensive database of 3D structures in the Protein Data Bank. Browse, search and visualize protein molecules, interactions and functions.

3. ebi.ac.uk › thornton-srv › databasesEMBL-EBI

   ebi.ac.uk › thornton-srv › databases

   Explore the structure and function of any protein complex or macromolecule with PDBsum Generate, a powerful and flexible tool from EMBL-EBI.

4. www.ncbi.nlm.nih.gov › pmc › articlesPDBsum: Structural summaries of PDB entries - PMC

   www.ncbi.nlm.nih.gov › pmc › articles

   Oct 27, 2017 · PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image‐based and include protein secondary structure, protein‐ligand and protein‐DNA interactions, PROCHECK analyses of structural quality, and many others.

   • Author: Roman A. Laskowski, Jagoda Jabłońska, Lukáš Pravda, Radka Svobodová Vařeková, Janet M. Thornton
   • DOI: 10.1002/pro.3289

   • Publish Year: 2018
   • Publication: Protein Sci. 2018 Jan; 27(1): 129-134.

5. www.ebi.ac.uk › services › data-resources-and-toolsData resources and tools | EMBL-EBI

   www.ebi.ac.uk › services › data-resources-and-tools

   • Cached

   A public repository for electron microscopy (EM) density maps of macromolecular complexes and subcellular structures. EMDB covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. DATA RESOURCE. CC0.

6. pubmed.ncbi.nlm.nih.gov › 28875543PDBsum: Structural summaries of PDB entries - PubMed

   pubmed.ncbi.nlm.nih.gov › 28875543

   PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others.

7. People also ask

   What is PDBsum?

   • PDBsum is a pictorial database that provides an at-a-glance overview of the contents of each 3D structure deposited in the Protein Data Bank ( PDB ). It shows the molecule (s) that make up the structure (ie protein chains, DNA, ligands and metal ions) and schematic diagrams of the interactions between them.

   PDBsum home page - EMBL-EBI

   www.ebi.ac.uk/thornton-srv/databases/pdbsum/

   See all results for this question

   What is pdbsum1?

   • PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data. Click on Installation in the lefthand menu for download instructions.

   PDBsum1 home page - EMBL-EBI

   www.ebi.ac.uk/thornton-srv/software/PDBsum1/

   See all results for this question

   Where is PDBsum located?

   • 3 National Centre for Biomolecular Research, Faculty of Science and CEITEC - Central European Institute of Technology, Masaryk University Brno, 625 00, Brno-Bohunice, Czech Republic. PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB).

   PDBsum: Structural summaries of PDB entries - PubMed

   pubmed.ncbi.nlm.nih.gov/28875543/

   See all results for this question

   What is the difference between NLM and PDBsum?

   • As a library, NLM provides access to scientific literature. Inclusion in an NLM database does not imply endorsement of, or agreement with, the contents by NLM or the National Institutes of Health. Protein Sci. 2018 Jan; 27 (1): 129–134. PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB).

   PDBsum: Structural summaries of PDB entries - PMC

   www.ncbi.nlm.nih.gov/pmc/articles/PMC5734310/

   See all results for this question

8. www.ebi.ac.uk › pdbe › pdb-component-libraryThe European Bioinformatics Institute < EMBL-EBI

   www.ebi.ac.uk › pdbe › pdb-component-library

   • Cached

   For PDB entries with multiple copies of a protein, the best chain is used. The topology viewer also depicts value-added annotation from SIFTS including residue-level mapping to UniProt, sequence families (Pfam), structure domains (SCOP, CATH) and structure quality from wwPDB validation reports.