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1. www.ebi.ac.uk › thornton-srv › databasesEMBL-EBI homepage | EMBL-EBI

   www.ebi.ac.uk › thornton-srv › databases

   EMBL-EBI homepage | EMBL-EBI

2. www.ebi.ac.uk › thornton-srv › softwarePDBsum1 home page - EMBL-EBI

   www.ebi.ac.uk › thornton-srv › software

   PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.

3. www.ebi.ac.uk › thornton-srv › softwarePDBsum1 operation - EMBL-EBI

   www.ebi.ac.uk › thornton-srv › software

   • Cached

   PDBsum 1 is run from the command line. Before you can run it, you need to create an environment variable called CATHPARAM that points to the file: pdbsum1/params/CATHPARAM. This is the file you edited during installation (see Installation Instructions ).

4. bio.tools › pdbsum_generatebio.tools

   bio.tools › pdbsum_generate

   This site uses cookies. By continuing to browse the site you are agreeing to our use of cookies. Find out more here.

5. www.ncbi.nlm.nih.gov › pmc › articlesPDBsum1 : A standalone program for generating PDBsum analyses

   www.ncbi.nlm.nih.gov › pmc › articles

   PDBsum1 is a standalone set of programs to perform the same structural analyses as provided by the PDBsum web server (https://www.ebi.ac.uk/pdbsum). The server has pages for every entry in the Protein Data Bank (PDB) and can also process user‐uploaded PDB files, returning a password‐protected set of pages that are retained for around 3 months.

   • Author: Roman A. Laskowski
   • Publication: Protein Sci. 2022 Dec; 31(12): e4473.

   • DOI: 10.1002/pro.4473
   • Published: 2022/12

6. onlinelibrary.wiley.com › doi › 10PDBsum1: A standalone program for generating PDBsum analyses

   onlinelibrary.wiley.com › doi › 10

   Oct 17, 2022 · This feature is accessed via the ‘PDBsum Generate’ link on the home page (https://www.ebi.ac.uk/pdbsum). Once the calculations are complete, a link to the results, with password, is e-mailed to the user.

7. People also ask

   What is pdbsum1?

   • PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data. Click on Installation in the lefthand menu for download instructions.

   PDBsum1 home page - EMBL-EBI

   www.ebi.ac.uk/thornton-srv/software/PDBsum1/index.html

   See all results for this question

   How do I run PDBsum 1?

   • PDBsum 1 is run from the command line. Before you can run it, you need to create an environment variable called CATHPARAM that points to the file: pdbsum1/params/CATHPARAM. This is the file you edited during installation (see Installation Instructions ). a. Linux where [fullpath] points to the location of the PDBsum 1 programs.

   PDBsum1 operation - EMBL-EBI

   www.ebi.ac.uk/thornton-srv/software/PDBsum1/manual.html

   See all results for this question

   What is PDBsum?

   • PDBsum is a pictorial database that provides an at-a-glance overview of the contents of each 3D structure deposited in the Protein Data Bank ( PDB ). It shows the molecule (s) that make up the structure (ie protein chains, DNA, ligands and metal ions) and schematic diagrams of the interactions between them.

   PDBsum home page - EMBL-EBI

   www.ebi.ac.uk/thornton-srv/databases/pdbsum/

   See all results for this question

   Can PDBsum 1 be downloaded as a set of executables?

   • PDBsum 1 can be downloaded as a set of executables. The source code is also provided in case the executables prove to be incompatible with the user's operating system; recompiling the source code should allow the programs to run. The programs comprise a collection of C and FORTRAN programs, some of which date back to the early 1990s.

   PDBsum1 : A standalone program for generating PDBsum analyses

   www.ncbi.nlm.nih.gov/pmc/articles/PMC9667822/

   See all results for this question

8. www.ncbi.nlm.nih.gov › pmc › articlesPDBsum: Structural summaries of PDB entries - PMC

   www.ncbi.nlm.nih.gov › pmc › articles

   Oct 27, 2017 · Users can upload their own structures for analysis via the Generate link on the PDBsum home page. A unique PDB code and password are e‐mailed when the analyses are complete, giving access to a set of PDBsum pages with all the features described above.