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PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.
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Feb 25, 2009 · PDBsum provides summary information about each experimentally determined structural model in the Protein Data Bank (PDB). Some of its most recent features include figures from the structure's key reference, citation data, Pfam domain diagrams, topology diagrams and protein-protein interactions.
PDBsum contains a number of protein structures that may be of interest in structure-based drug design. One branch of PDBsum, known as DrugPort, focuses on these models and is linked with the DrugBank drug target database.
Oct 27, 2017 · A PDBsum page is generated for every structure submitted to ProFunc. Finally, LigSearch predicts small molecule ligands that might bind to a given protein (submitted as a sequence or structure). It, too, is intimately linked to PDBsum.
As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others.
Jan 1, 2005 · PDBsum is a database of mainly pictorial summaries of the 3D structures of proteins and nucleic acids in the Protein Data Bank. Its pages aim to provide an at-a-glance view of the contents of every 3D structure, plus detailed structural analyses of each protein chain, DNA–RNA chain and any bound ligands and metals.
Jan 1, 2001 · PDBsum is a web-based database providing a largely pictorial summary of the key information on each macromolecular structure deposited at the Protein Data Bank (PDB).
