George Bland
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A quartet is a group of four people who play musical instruments or sing as a group, or a piece of music written for four people. Learn more about the meaning, usage and pronunciation of quartet, and see examples and translations in different languages.
- Overview
- Version Change log
- Getting Started
- Usage
- Citation
quarTeT is a collection of tools for T2T genome assembly and basic analysis in automatic workflow.
Task include:
•AssemblyMapper: reference-guided genome assembly
•GapFiller: long-reads based gap filling
•TeloExplorer: telomere identification
•CentroMiner: centromere candidate prediction
1.1.7
•Support RepeatMasker's TE annotation format for CentroMiner module.
1.1.6
•add new option 'maximum TR length' (-r) for CentroMiner to avoid trf stuck. (Thanks to atotickov, PR#22)
•disable unstable 'join' mode for GapFiller by default. Use '--enablejoin' option to enable this mode. '--fillonly' option is removed.
1.1.5
Use quarTeT on Web
quarTeT can be easily accessed on our web server.
Use quarTeT on local
quarTeT command-line program is availble for Linux.
AssemblyMapper
AssemblyMapper is a reference-guided assemble tool. A phased contig-level assembly and a close-related reference genome are required as input, both in fasta format. Note that contigs should be phased. It's recommended to obtain such an assembly using hifiasm. you can convert {prefix}.bp.hap1.p_ctg.gfa and {prefix}.bp.hap2.p_ctg.gfa generated by hifiasm to FASTA format as input, respectively. Output files should be as follow:
GapFiller
GapFiller is a long-reads based gapfilling tool. A gap-tied genome and corresponding long-reads are required as input, both in fasta format. If possible, using long-reads assembled and polished contigs instead of reads may improve the quality. Output files should be as follow:
TeloExplorer
TeloExplorer is a telomere identification tool. A genome file in fasta format is required as input. Output files should be as follow:
Yunzhi Lin, Chen Ye, Xingzhu Li, Qinyao Chen, Ying Wu, Feng Zhang, Rui Pan, Sijia Zhang, Shuxia Chen, Xu Wang, Shuo Cao, Yingzhen Wang, Yi Yue, Yongsheng Liu, Junyang Yue. quarTeT: a telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification. Horticulture Research 2023;10:uhad127, https://doi.org/10.1093/hr/uhad...
Mental health care, made easier. Quartet reaches people who need care, connects them to the right care, and supports their care journeys.
Learn the origin, usage, and examples of the word quartet, which means a musical composition for four instruments or voices or a group of four. Find synonyms, related phrases, and dictionary entries for quartet.
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A street brass quartet. In music, a quartet (French: quatuor, German: Quartett, Italian: quartetto, Spanish: cuarteto, Polish: kwartet) is an ensemble of four singers or instrumental performers. [1] [2]
A quartet is a group of four people who play musical instruments or sing together, or a piece of music written for four people. Learn more about the word, its usage and pronunciation, and see examples and translations in different languages.
noun. a group of four singers or instrumentalists or a piece of music composed for such a group See string quartet. any group of four. a quartet of fast bowlers.
