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4 days ago · 8qjo: Substrate preference, RNA binding and active site versatility of the Stenotrophomonas maltophilia nuclease SmNuc1, explained by a structural study
4 days ago · 8qjd: T6SS-associated Rhs proteins form toxin containers: Structural and functional insights into bacterial weaponry and self-protection
4 days ago · 8qsr: Cryo-EM structure of the glucose-specific PTS transporter IICB from E. coli in the inward-open state
1 day ago · PDBsum is a visual catalogue of 3D assemblies in the Protein Data Panel that provides information about interactions between standard inhibitors and proteins. We addressed missing residues and generated side chains using CHIMERA v1.16 to prepare the proteins for docking studies.
4 days ago · Pr/Pfr heterodimeric state of photosensory core module of Stigmatella aurantiaca bacteriophytochrome 2. Released: 25 Sep 2024 DOI: 10.2210/pdb8uqi/pdb
2 days ago · We use the UCSF ChimeraX tool (alphafold) to examine the precise interactions between the top seven protein docking results to validate the interface PDBSum predictions (Fig. 7a, b). We obtained the best possible result for the ADK-CP, GLO1-Rep, and ADK-betaC1 interaction by combining the entire PPI results in HANDDOCK and interface prediction findings, including the binding energy, the number of residues involved, the interface area, the total number of hydrogen bonds, and non-bonded atoms.
3 days ago · The effects of high-pressure (HP) on globular proteins are generally governed by the free energy relationship between pressure and volume: with increasing pressure, systems compress to states that occupy less volume.
