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Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape is available as a platform-independent open-source Java application, released under the terms of the LGPL. By downloading Cytoscape, you agree that you have read the license agreement that follows and agree to its terms. If you don't agree, do not download Cytoscape.
Cytoscape 3.0 is the latest version of Cytoscape, which introduces a whole new architecture, developer API and set of user controls. Cytoscape 3.0 represents a major redesign from the ground up, toward the goal of provide a stable, extensible, high-performance platform for network visualization and analysis.
Newest Releases. Get Started with the App Store ». ReactomeFIPlugIn. Explore Reactome pathways and search for diseases related pathways and network patterns using the Reactome functional interaction network. stringApp. Import and augment Cytoscape networks from STRING.
Cytoscape 3.10.2 User Manual. The Cytoscape User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.
gui-distribution - Actual distribution created from core projects and core apps. app-developer - API JAR file for app developers. Instead of cloning each sub-project's repository one-by-one, you can use the utility script in the Cytoscape repository to initialize your workspace all at once (see below).
