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As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.
As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists.
Introduction. Guide to Understanding PDB Data is designed to help you get started with finding and exploring the hundreds of thousands of 3D structures in the PDB archive. If you’re new to the world of structural biology, start with Introduction to the PDB.
PDB Overview. The PDB archive is a repository of atomic coordinates and other information describing proteins and other important biological macromolecules.
The Protein Data Bank ( PDB) [1] is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which is overseen by the Worldwide Protein Data Bank (wwPDB). These structural data are obtained and deposited by biologists and biochemists worldwide through the use of experimental ...
Chemical descriptions of all of the monomers and ligands in PDB structures are provided in PDBx/mmCIF format in the Chemical Component Dictionary. The collection of PDBx/mmCIF data categories used in the Chemical Component Dictionary are in the CHEM_COMP_DICTIONARY category group.
The RCSB PDB creates tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.
The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank, now succeeded by the mmCIF format.
Protein Data Bank (PDB) format is a standard for files containing atomic coordinates. It is used for structures in the Protein Data Bank and is read and written by many programs. While this short description will suffice for many users, those in need of further details should consult the definitive description .
2 days ago · Source code: Lib/pdb.py. The module pdb defines an interactive source code debugger for Python programs. It supports setting (conditional) breakpoints and single stepping at the source line level, inspection of stack frames, source code listing, and evaluation of arbitrary Python code in the context of any stack frame.
