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Feb 3, 2020 · Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants (R. 43) and Ensembl Metazoa (R. 43). An additional 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10).
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Apr 4, 2020 · In a GO cellular component enrichment analysis, Figure 1B and C shows that three terms related to cytoskeleton overlap in many genes. For species with fully sequenced genomes, ShinyGO plots the chromosomal locations of all the genes in the user’s list and conducts statistical analysis on the genomic features.
#geneontology #GO #enrichment #webtoolIn this video, I have explained how can we use an online tool for generating gene ontology enrichment graphs? Go shiny ...
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- Dr. Asif's Mol. Biology
Mar 29, 2019 · 3/29/2019: V.0.51, Annotation database updated. Welcome to ShinyGO! Just paste your gene list to get enriched GO terms and othe pathways for over 270 plant and animal species, based on annotation from Ensembl (Release 95), Ensembl plants (R. 42) and Ensembl Metazoa (R. 42). In addition, it also produces KEGG pathway diagrams with your genes ...
Enriched GO terms and pathways: In addition to the enrichment table, a set of plots are produced. If KEGG database is choosen, then enriched pathway diagrams are shown, with user's genes highlighted, like this one below: Many GO terms are related. Some are even redundant, like "cell cycle" and "cell cycle process".
ShinyGO is an intuitive, graphical web application that can help researchers gain actionable insights from gene lists, based on a large annotation database derived from Ensembl and STRING-db for 59 plant, 256 animal, 115 archaeal, and 1678 bacterial species. MOTIVATION Gene lists are routinely produced from various genome-wide studies. Enrichment analysis can link these gene lists with underlying molecular pathways and functional categories such as gene ontology (GO) and other databases ...
