Search results
EMBL-EBI homepage | EMBL-EBI
PDBsum1 is a standalone version of PDBsum Generate for local installation and running. It generates the same analyses as PDBsum, with the added advantage of allowing you direct access to the computed data.
Oct 27, 2017 · A PDBsum page is generated for every structure submitted to ProFunc. Finally, LigSearch predicts small molecule ligands that might bind to a given protein (submitted as a sequence or structure). It, too, is intimately linked to PDBsum.
PDBsum 1 is run from the command line. Before you can run it, you need to create an environment variable called CATHPARAM that points to the file: pdbsum1/params/CATHPARAM. This is the file you edited during installation (see Installation Instructions ).
Jan 1, 2001 · PDBsum is a web-based database providing a largely pictorial summary of the key information on each macromolecular structure deposited at the Protein Data Bank (PDB).
PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, protein-ligand and protein-DNA interactions, PROCHECK analyses of structural quality, and many others.
Jan 1, 2005 · PDBsum is a database of mainly pictorial summaries of the 3D structures of proteins and nucleic acids in the Protein Data Bank. Its pages aim to provide an at-a-glance view of the contents of every 3D structure, plus detailed structural analyses of each protein chain, DNA–RNA chain and any bound ligands and metals.
PDBsum contains a number of protein structures that may be of interest in structure-based drug design. One branch of PDBsum, known as DrugPort, focuses on these models and is linked with the DrugBank drug target database.
Sep 5, 2017 · Abstract PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image-based and include protein secondary structure, prote...
As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function.
