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May 24, 2022 · The overall performance of CB-Dock2 on Astex Diverse Set. (A) The success rates of the top-ranking binding modes achieved by CB-Dock, FitDock and CB-Dock2 respectively.
CB-Dock CYSCORE FitDock LigMate DrugRep. AbRSA Abalign. DRSP SRSD DrugDevCovid19. PDB Tools KDEClassifier. Chemistry Databases BindingDB ChEMBL DrugBank PubChem ZINC.
CB-Dock is a protein–ligand blind docking server de-velopedbyourlab(13).Itemployedourprotein-surface-curvature-based cavity detection approach (CurPocket)
Jul 1, 2019 · CB-Dock ranked the binding modes according to Vina score and showed an interactive 3D visualization of the binding modes (Liu et al., 2020). Based on the principle of molecular docking, the most ...
CB-Dock CYSCORE FitDock LigMate DrugRep. AbRSA Abalign. DRSP SRSD DrugDevCovid19. PDB Tools KDEClassifier. Chemistry Databases BindingDB ChEMBL DrugBank PubChem ZINC.
Jul 1, 2019 · CB-Dock predicts binding regions of a given protein, calculates the centers and sizes with a curvature-based cavity detection approach, and performs docking with the state-of-the-art docking software Autodock Vina . CB-Dock also ranks the binding modes according to Vina scores and provides an interactive 3D visualization of the binding modes.
Jan 11, 2024 · CB-Dock is a recent protein-ligand docking tool that uses a blind docking approach to predict the binding poses of ligands to proteins after identification of the binding site. CB-Dock uses its designed cavity detection approach, called CurPocket. CurPocket is a computational approach utilized for the prediction of protein-ligand binding sites ...
