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1. www.rcsb.orgRCSB PDB: Homepage

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   RCSB PDB provides access and tools for exploration, visualization, and analysis of 3D structures from the PDB archive and computed structure models. Learn about the latest features, annotations, webinars, and events related to structural biology.

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     Mol* 3D Viewer. This version of Mol* can be used to upload...

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     This tool allows the selection of protein 3D structures for...

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     Download - RCSB PDB: Homepage

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     About PDB-101 Testing instance. Researchers around the globe...

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     Whether you are looking for a particular PDB structure, need...

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     Documentation - RCSB PDB: Homepage

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     Tools are provided to search the PDB dictionary for chemical...

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     Read and write PDB and mmCIF format files, and translate...

2. www.rcsb.org › searchPrepare Data - RCSB PDB

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   RCSB PDB is a database of protein structures and models from the PDB. Users can search, visualize, download, and analyze data based on sequence, structure, and function.

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4. en.wikipedia.org › wiki › Protein_Data_BankProtein Data Bank - Wikipedia

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   The Protein Data Bank ( PDB) [1] is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which is overseen by the Worldwide Protein Data Bank (wwPDB). These structural data are obtained and deposited by biologists and biochemists worldwide through the use of experimental ...

5. pdb101.rcsb.org › learn › guide-to-understanding-pdbPDB-101: Learn: Guide to Understanding PDB Data: Beginner’s ...

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   Chemical descriptions of all of the monomers and ligands in PDB structures are provided in PDBx/mmCIF format in the Chemical Component Dictionary. The collection of PDBx/mmCIF data categories used in the Chemical Component Dictionary are in the CHEM_COMP_DICTIONARY category group.

6. pdb101.rcsb.org › learn › guide-to-understanding-pdbPDB-101: Learn: Guide to Understanding PDB Data: Introduction

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   PDB-101 is a portal of RCSB PDB that helps you find and explore the 3D structures of biomolecules in the PDB archive. It covers topics such as PDB format, coordinates, methods, biology, and graphics.

7. pdb101.rcsb.org › learn › guide-to-understanding-pdbPDB-101: Learn: Guide to Understanding PDB Data: PDB Overview

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   Learn how to use the PDB archive of atomic coordinates and other information describing proteins and other biological macromolecules. Find out how to search, visualize, read, and analyze PDB data, and what challenges you may encounter.

8. People also ask

   What is a PDB archive?

   • The PDB archive is a repository of atomic coordinates and other information describing proteins and other important biological macromolecules. Structural biologists use methods such as X-ray crystallography, NMR spectroscopy, and cryo-electron microscopy to determine the location of each atom relative to each other in the molecule.

   PDB-101: Learn: Guide to Understanding PDB Data: PDB Overview

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   What is the Protein Data Bank (PDB)?

   • The Protein Data Bank (PDB) was established as the 1 st open access digital data resource in all of biology and medicine ( Historical Timeline ). It is today a leading global resource for experimental data central to scientific discovery.

   RCSB PDB: About RCSB PDB: A Living Digital Data Resource That Enables

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   What is the RCSB PDB?

   • The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists.

   RCSB PDB: Homepage

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   What is a PDB file?

   • These files are available in several formats (PDB, mmCIF, XML). A typical PDB formatted file includes a large "header" section of text that summarizes the protein, citation information, and the details of the structure solution, followed by the sequence and a long list of the atoms and their coordinates.

   PDB-101: Learn: Guide to Understanding PDB Data: PDB Overview

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   What does wwPDB stand for?

   • The Worldwide Protein Data Bank ( wwPDB) was formed to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community. It consists of organizations that act as deposition, data processing and distribution centers for PDB data.

   RCSB PDB: About RCSB PDB: A Living Digital Data Resource That Enables

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   What is pdbx/mmCIF?

   • PDBx/mmCIF explicitly documents all relationships between common data items (e.g. atom and residue identifiers) which permits software applications to evaluate and validate referential integrity with any PDB entry, and maps information between the residue sequences of the experimental sample and the model coordinates.

   Beginner’s Guide to PDB Structures and the PDBx/mmCIF Format

   pdb101.rcsb.org/learn/guide-to-understanding-pdb-data/beginner’s-guide-to-pdbx-mmcif

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9. www.rcsb.org › pages › about-usAbout RCSB PDB: A Living Digital Data Resource That Enables ...

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   The RCSB PDB creates tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.