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Apr 16, 2015 · JPred requires input as either a single sequence in Raw or FASTA formats (link to format examples) , cut and pasted into the text box. All other formats/options including a multiple sequence alignment or batch submission could be used through advanced options.
Jul 1, 2015 · JPred4 features higher accuracy, with a blind three-state (α-helix, β-strand and coil) secondary structure prediction accuracy of 82.0% while solvent accessibility prediction accuracy has been raised to 90% for residues <5% accessible.
JPred is a Protein Secondary Structure Prediction server and has been in operation since approximately 1998. JPred incorporates the Jnet algorithm in order to make more accurate predictions. In addition to protein secondary structure JPred also makes predictions on Solvent Accessibility and Coiled-coil regions ( Lupas method).
JPred Tutorials. How to make a prediction from a single sequence and what the output means (PDF). Submitting more than one sequence to JPred as a batch job (PDF). Submitting multiple sequence alignment (PDF). Monitoring tools (PDF).
Apr 16, 2015 · In addition to protein secondary structure, JPred also makes predictions of solvent accessibility and coiled-coil regions. The JPred service runs up to 94 000 jobs per month and has carried out over 1.5 million predictions in total for users in 179 countries.
From the monitoring and statistics tools we use on JPred - we know that median time a job takes is about 5 min and given multiple nodes JPred uses for its jobs - JPred is capable of going through up to hundreds of jobs per hour.
Jpred. Jpred v.4 is the latest version of the JPred Protein Secondary Structure Prediction Server [1] which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction, [2] that has existed since 1998 in different versions. [3]
Jul 1, 2008 · Jpred (http://www.compbio.dundee.ac.uk/jpred) is a secondary structure prediction server powered by the Jnet algorithm. Jpred performs over 1000 predictions per week for users in more than 50 countries.
JPred Secondary Structure Prediction. Secondary structure prediction methods attempts to infer the likely secondary structure for a protein based on its amino acid composition and similarity to sequences with known secondary structure.
Jul 1, 2015 · JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.
