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The Dali server is a network service for comparing protein structures in 3D. You submit the coordinates of a query protein structure and Dali compares them against those in the Protein Data Bank (PDB).
Dali is a protein structure comparison server. The server has been running continuously for over 20 years. The server operated first in Heidelberg (Germany), then Hinxton (UK), now Helsinki (Finland). Dali is based on distance matrix comparison (see References for methods). In favourable cases, structure comparison
The web site consists of three parts: (i) the Dali server compares newly solved structures against structures in the Protein Data Bank (PDB), (ii) the Dali database allows browsing precomputed structural neighbourhoods and (iii) the pairwise comparison generates suboptimal alignments for a pair of structures.
Jul 1, 2010 · The Dali server, Dali Database and pairwise comparison use a common output format and share interactive analysis tools. The result consists of (i) a list of structural neighbours, ranked by Z -score, and (ii) the alignment data.
May 24, 2022 · The Dali server is available from our website http://ekhidna2.biocenter.helsinki.fi/dali. It runs DaliLite.v5 ( 19 ). DaliLite.v5 is an open source software, which can be downloaded to run as a standalone.
Jul 8, 2016 · The Dali server (http://ekhidna2.biocenter.helsinki.fi/dali) is a network service for comparing protein structures in 3D. In favourable cases, comparing 3D structures may reveal biologically interesting similarities that are not detectable by comparing sequences.
May 10, 2010 · The Dali server, Dali Database and pairwise comparison use a common output format and share interactive analysis tools. The result consists of (i) a list of structural neighbours, ranked by Z -score, and (ii) the alignment data.
The most familiar version is the Dali server, which performs a database search comparing a query structure supplied by the user against the database of known structures (PDB) and returns the list of structural neighbors by e-mail.
Jul 8, 2016 · The Dali server (http://ekhidna2.biocenter.helsinki.fi/dali) is a network service for comparing protein structures in 3D. In favourable cases, comparing 3D structures may reveal biologically interesting similarities that are not detectable by comparing sequences.
Oct 13, 2019 · DALI is a popular resource for comparing protein structures. The software is based on distance-matrix alignment. The associated web server provides tools to navigate, integrate and organize some data pushed out by genomics and structural genomics. The server has been running continuously for the past 25 years.
