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1. warwick.ac.uk › fac › sciGenerating Ramachandran (phi/psi) plots for Proteins

   warwick.ac.uk › fac › sci

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   RAMPAGE is a web-based tool that allows you to generate and display Ramachandran plots for any protein structure from a PDB file. You can also compare the plots with different definitions of allowed and disallowed regions, and download the data as images or text files.

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3. swift.cmbi.umcn.nl › servers › htmlRamachandran plot

   swift.cmbi.umcn.nl › servers › html

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   Introduction. This server will display a Ramachandran plot, against a background of phi-psi probabilities. Methods. This server will display a coloured Ramachandran plot. Blue means helix, red means strand and green means turn and loop according to DSSP. The lines in the plot indicate prefered areas.

4. www.ccp4.ac.uk › html › rampageRAMPAGE (CCP4: Supported Program) — CCP4 documentation

   www.ccp4.ac.uk › html › rampage

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   RAMPAGE is a CCP4 program that generates a Ramachandran plot using data from 500 high-resolution protein structures. It can be used to validate the phi and psi angles of each residue in an input pdb file.

5. swift.cmbi.umcn.nl › servers › htmlRamachandran plot evaluation.

   swift.cmbi.umcn.nl › servers › html

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   Ramachandran plot evaluation. Introduction. Determines the quality of a Ramachandran plot. Methods. The Ramachandran plot is probably the very best indicator of the quality of the experimental determination of three dimesional protein coordinates.

6. bip.weizmann.ac.il › toolbox › structureLSCF Bioinformatics - Protein structure - Model validation

   bip.weizmann.ac.il › toolbox › structure

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   Nov 27, 2019 · A collection of web tools and databases for assessing the reliability of structural models (crystallographic, NMR, or homology based models). Includes RAMPAGE, a tool for Ramachandran plot analysis, and other programs such as PROCHECK, ERRAT, WHAT CHECK, and more.

7. cloud.ccp4.ac.uk › docRampage — CCP4 Cloud 1.7 documentation

   cloud.ccp4.ac.uk › doc

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   RAMPAGE is a consequence of RAPPER which generates a Ramachandran plot by data derivative by the Richardsons and coworkers. RAPPER performs conformer modelling through sampling residue-specific phi / psi propensity tables and rotameric states with given a set of restraints.

8. People also ask

   What is Rampage?

   • [ Keyworded input] RAMPAGE is an offshoot of RAPPER which generates a Ramachandran plot using data derived by the Richardsons and coworkers. It is recommended that it be used for this purpose in preference to PROCHECK, which is based on much older data.

   RAMPAGE (CCP4: Supported Program) — CCP4 documentation

   www.ccp4.ac.uk/html/rampage.html

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   What is rampage in rapper?

   • RAMPAGE is a consequence of RAPPER which generates a Ramachandran plot by data derivative by the Richardsons and coworkers RAPPER performs conformer modelling through sampling residue-specific phi / psi propensity tables and rotameric states with given a set of restraints.

   Rampage — CCP4 Cloud 1.7 documentation

   cloud.ccp4.ac.uk/manuals/html-taskref/doc.task.Rampage.html

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9. warwick.ac.uk › fac › sciDrawing Ramachandran (phi/psi) plots for Proteins with R

   warwick.ac.uk › fac › sci

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   The colour scheme used is that of their online tool RAMPAGE (see other tools/programs for Ramachandran Plots), which produces even nicer images. Loading the Phi/Psi angles for your protein.