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Swiss-PdbViewer (aka DeepView) has been developped since 1994 by Nicolas Guex. Swiss-PdbViewer was initially tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at the Biozentrum in Basel.
If you have problems installing spdbv, see "FAQ: Installing Swiss Pdb Viewer for PC" for technical details. The following steps 2-6 are optional: Download Swiss-PdbViewer Loop Database (2.45Mb).
Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts.
Automated comparative protein structure modeling with SWISS-MODEL and Swiss-PdbViewer: A historical perspective.
Swiss-PdbViewer can load and display several molecules simultaneously. Each molecule is loaded into its own layer . Each molecule is composed of groups ( i.e. amino acids, nucleotides, substrates...).
Direct Server support: You may import PDB or ExPDB files, SwissProt entries etc. into Swiss-Pdb Viewer directly from the network. OpenGL support for Mac . The Find dialog has been improved (PROSITE pattern search ) allowing for mismatches.
If you wish to learn the basic manipulation of Swiss-PdbViewer through a tutorial, I recommend that you have a look at the one prepared by Prof. Gale Rhodes from the University of Southern Maine Portland.
If you wish to learn the basic manipulation of Swiss-PdbViewer through a tutorial, I recommend that you have a look at the one prepared by Prof. Gale Rhodes from the University of Southern Maine Portland.
Feb 26, 2024 · Swiss PDB viewer. A 3D graphics and molecular modeling program for the simultaneous analysis of multiple models and for model-building into electron density maps. The software is available for Mac (OSX or PPC), Windows, Linux, or SGI. UGENE.
The Tools Menu. The tools menu regroups tools that are less frequently used than those present in the display window (or just once for each layer). This avoid screen cluttering, and allows a better explanation of their function than an icon would. Compute H-bonds.
