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- Overview
- Package Installation
- Test the package
- Vignettes and examples
- New in version >= 2.1.2
- Interacting with signatures
- Get help
- Citation
UCell is an R package for scoring gene signatures in single-cell datasets. UCell scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation demands relatively less computing time and memory than other robust methods, enabling the processing of large datasets (>10^5 cells). UCell can be applied to any cell vs. gene data matrix, and includes functions to directly interact with Seurat and Bioconductor's SingleCellExperiment objects.
Find the installation instructions for the package and usage vignettes below.
UCell is on Bioconductor To install the package from Bioc run:
For previous releases of UCell, you may download a tagged version from GitHub:
Load sample data and test your installation:
Vignettes to run UCell on matrices, SingleCellExperiment or Seurat objects can be found at the UCell Bioc page.
Extended tutorial are also available at:
•Single-cell gene signature scoring with UCell
•Using UCell with Seurat objects
Single-cell data are sparse. It can be useful to 'impute' scores by neighboring cells and partially correct this sparsity. The new function SmoothKNN performs smoothing of single-cell signature scores by weighted average of the k-nearest neighbors in a given dimensionality reduction. It can be applied directly on SingleCellExperiment or Seurat obje...
For easy retrieval and storing of signatures, check out SignatuR:
See more information about UCell and its functions by typing ?UCell within R. Please address your questions and bug reports at: UCell issues.
UCell: robust and scalable single-cell gene signature scoring. Massimo Andreatta & Santiago J Carmona (2021) CSBJ https://doi.org/10.1016/j.csbj.2021.06.043
Ucell is a mobile network brand in Uzbekistan, owned and operated by the Uzbek company COSCOM, itself owned by State Committee of the Republic of Uzbekistan for Assistance to Privatized Enterprises and Development of Competition (a governmental authority of Uzbekistan).
Jun 14, 2024 · Raqamingizni va aloqa xizmatlarini boshqarish uchun “Ucell” bepul ilovasi. Barcha Ucell abonentlari uchun ilovadagi trafik bepul, hattoki barcha megabaytlar tugagan bo‘lsa ham. Istalgan joyda...
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UCell is a package for evaluating gene signatures in single-cell datasets. UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even on ...
Ucell Company was a part of Telia Company Group, providing telecommunication services in the Nordic and Baltic countries, Spain and in developing countries of Eurasia, including Russia and Turkey.
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