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Webgestalt for non-model organisms. Good Morning everybody I'm new to this field and need to functionally ...
Jun 20, 2019 · to Sofie Demeyer, webgestalt A few lines in your input file have an empty gene ID, for example line 1202. Currently, it is stringent and checks every line to have 2 columns.
Jul 28, 2022 · There is an option for it in the expandable "advanced parameters" section in the submission form. But if you didn't change it, it should be "BH" or Benjamini-Hochber.
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May 10, 2023 · to webgestalt. Unless you directly permute the gene ranks instead. Apologies if I overlooked it ...
Sep 29, 2022 · to webgestalt Dear Team I have a question regarding the FDRs or p-value resulting from ORA or GSEA analysis of gene sets – I am not clear about the threshold for indication of an FDR = 0 in the table?
Mar 13, 2023 · This is most likely because your rank file is in the wrong format. For webgestalt, the rnk file needs have IDs in the first column and the score in the second separated by a tab. In excel, you can do this by saving as a "Tab delimited Text (.txt)" file. Then you have to rename the file ending into .rnk. It sounds like you may have done this ...
May 1, 2024 · to webgestalt. Please guide me or send me some previously published articles that used webgestalt to ...
Nov 18, 2023 · Yes, I am using very small input gene list, which have a total of 15 gene that having p val <0.01. I do have another list of genes that resulting p<0.05 with 51 gene list.
Dec 6, 2023 · In most cases, it is simple. 20 will show 10 positive and 10 negative sorted by FDR. It could be 10 positive and 5 negative if there are just 5 significant gene sets in the negative direction.
